Computational Vaccine Design (Methods in Molecular Biology) by Pedro A. Reche

Description: 1. Vaccine Design: an introduction Pedro A Reche PART I: IMMUNOMICS AND SYSTEM IMMUNOLOGY 2. Epitope binning of monoclonal and polyclonal antibodies by biolayer interferometryKaito Nagashima and Jarrod J. Mousa 3. Clustering and annotation of T-cell receptor repertoires Sebastiaan Valkiers, Sofie Gielis, Vincent M.L. Van Deuren, Kris Laukens, and Pieter Meysman 4. Protocol for Classification Single Cell PBMC Types from Pathological Samples using Supervised Machine Learning Minjie Lyu, Lin Xin, Huan Jin, Lou T. Chitkushev, Guanglan Zhang, Derin B. Keskin and Vladimir Brusic 5. Unbiased, high-throughput identification of T cell epitopes by ELISPOT Paul V. Lehmann, Diana R. Roen, and Alexander A. Lehmann 6. CD4+ T cell epitope identification from complex parasite antigen mixtures Miguel Alvaro-Benito, Friederike Ebner, Miriam Bertazzon, Eliot Morrison 7. Computational grafting of epitopes Manish Manish, Smriti Mishra, Monika Pahuja, Ayush Anand, Naidu Subbarao and Ram Samudrala 8. Manufacture of Mesoporous Silicon Microparticles (MSMPs) as adjuvants for vaccine delivery Ana Lopez-Gomez, Irene Real-Arevalo, Raul Martin-Palma, Eduardo Martinez-Naves, Manuel Gomez del Moral PART II: DATABASES 9. IEDB and CEDAR: Two Sibling Databases to Serve the Global Scientific Community Nina Blazeska, Zeynep Kosaloglu-Yalcin, Randi Vita1, Bjoern Peters and Alessandro Sette 10. Updates on databases of allergens and allergen-epitopes Rajat Kanti Karkar, Nandini Ghosh, Gaurab Sircar, Sudipto Saha 11. TSNAD and TSNAdb: The useful toolkit and database for clinical application of tumor-specific neoantigens Jingcheng Wu and Zhan Zhou 12. EPIPOX: A Resource facilitating epitope-vaccine design against human Pathogenic Orthopoxviruses Laura Ballesteros-Sanabria, Hector F.Pelaez-Prestel, Pedro A. Reche1 and Esther M. Lafuente PARTE III. PREDICTON OF ANTIGENICITY AND IMMUNOGENICITY: TOOLS AND PROTOCOLS 13. Prediction of linear B cell epitopes in proteins Juan R. de los Toyos 14. Design of linear B-cell epitopes and evaluation of their antigenicity, allergenicity, and toxicity: an immunoinformatics approach Vijaya Sai Ayyagar 15. NetCleave: an open-source algorithm for predicting C-terminal antigen processing for MHC-I and MHC-IIRoc Farriol-Duran, Marina Vallejo-Vallés, Pep Amengual-Rigo, Martin Floor and Víctor Guallar 16. Prediction of TAP transport of peptides with variable length using TAPREG Hector F. Pelaez-Prestel, Laura Ballesteros-Sanabria, Pedro A. Reche 17. Docking-based Prediction of Peptide Binding to MHC Proteins Mariyana Atanasova and Irini Doytchinova 18. The PANDORA software for anchor-restrained peptide:MHC modelling Dario F. Marzella, Giulia Crocioni, Farzaneh M. Parizi, Li C. Xue 19. Prediction of Peptide and TCR CDR3 Loops in Formation of Class I MHC-Peptide-TCR Complexes using Molecular Models with Solvation Nairuti Milan Mehta, Yuhui Li, Vini Patel, Wanning Li, Noam Morningstar-Kywi, Mateusz Pospiech, Houda Alachkar, Ian S Haworth 20. Prediction of Bacterial Immunogenicity by Machine Learning Methods Ivan Dimitrov and Irini Doytchinova21. Vaxi-DL: an artificial Intelligence enabled platform for vaccine development P Preeti, Swarsat Kaushik Nath, Nevidita Arambam, Trapti Sharma, Priyanka Ray Choudhury, Alakto Choudhury, Ulrich Strych, Peter J. Hotez, Maria Elena Bottazzi, Kamal Rawal 22. A web-based method for the identification of IL6 based immunotoxicity in vaccine candidates Anjali Dhall, Sumeet Patiyal, Neelam Sharma, Salman Sadullah Usmani, and Gajendra Pal Singh Raghava 23. In silico tool for identification, designing and searching of IL13 inducing peptides in antigensShipra Jain, Anjali Dhall, Sumeet Patiyal, and Gajendra P. S. Raghava PART IV: COMPUTATIONAL VACCINOLOGY APPLICATIONS AND PROTOCOLS 24. A lean Reverse Vaccinology pipeline with publicly available bioinformatic tools Bart Bart Cuypers, Rino Rappuoli and Alessandro Brozzi 25. Immunoinformatics protocol to design multi-epitope subunit vaccines Parismita Kalita, Aditya K. Padhi, and Timir Tripathi 26. In-silico Structure-based Vaccine Design Sakshi Piplani, David Winkler, Yoshikazu Honda-Okubo, Varun Khanna, Nikolai Petrovsky 27. Reverse vaccinology for influenza A virus: from genome sequencing to vaccine design Valentina Di Salvatore, Giulia Russo and Francesco Pappalardo 28. Immunoinformatics vaccine design for Zika virus Ana Clara Antonelli, Vinnycius Pereira Almeida, Simone Fonseca 29. Immunoinformatics approaches in designing vaccines against COVID-19 Ankita Chakraborty, Jagadeesh Bayry, Suprabhat Mukherjee 30. A Sample Guideline for Reverse Vaccinology Approach for the Development of Subunit Vaccine using Varicella Zoster as a Model Disease Elif Cireli and Levent Çavas 31. Computational Vaccine Design for Poxviridae Family Viruses Abbas Khan, Dong-Qing Wei, and Muhammad Suleman 32. Computational prediction of Trypanosoma cruzi epitopes towards the generation of an epitope-based vaccine against Chagas disease Albert Ros-Lucas, David Rioja-Soto, Joaquim Gascón, Julio Alonso-Padilla 33. Computational vaccine design for common allergens Nandini Ghosh, Gaurab Sircar, Sudipto Saha

Price: 436 AUD

Location: Hillsdale, NSW

End Time: 2025-02-04T09:29:27.000Z

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